Science & Technology

Channels: Science & Technology | Financial Markets | Artificial Intelligence | Blockchain


A matchmaker for microbiomes

[2019.12.02, Mon 09:03] Microbiomes play essential roles in the natural processes that keep the planet and our bodies healthy, so it's not surprising that scientists' investigations into these diverse microbial communities are leading to advances in medicine, sustainable agriculture, cheap water purification methods, and environmental cleanup technology, just to name a few. Researchers have devised a new way to sort through the information overload. Writing in Nature Methods, a team led by UC San Diego describes a neural network-based approach called microbe-metabolite vectors, which uses probabilities to identify the most likely relationship of co-occurring microbes and metabolites. The team demonstrates how mmvec can outperform traditional correlation-based approaches by applying mmvec to datasets from two well-studied microbiomes types-those found in desert soils and cystic fibrosis patients' lungs-and gives a taste of how the approach could be used in the future by revealing relationships between microbially-produced metabolites and inflammatory bowel disease. "Previous statistical tools used to estimate microbe-metabolite correlations performed comparably to random chance," said Marc Van Goethem, a postdoctoral researcher who is one of three study authors from Berkeley Lab. "Their poor performance led to the detection of spurious relationships and missed many true relationships. Mmvec is a powerful new tool that accurately links metabolite and microbial abundances to solve this problem. There could be wide-ranging applications from clinical trials to environmental engineering. Ultimately, mmvec will allow us to begin moving away from simple pattern recognition towards unravelling mechanisms." Learning representations of microbe-metabolite interactions, Nature Methods. Citation: A matchmaker for microbiomes retrieved 2 December 2019 from https://phys.org/news/2019-12-matchmaker-microbiomes.
Read on Phys.org >   Google the news >>

<< Back


(c) 2019 Geo Glance